Scaffold Ga0137388_10007742

Overview

Basic Information

• Taxon OID: 3300012189
• Scaffold ID: Ga0137388_10007742
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7377
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021259	Metagenome / Metatranscriptome	219	Y
F026234	Metagenome	198	Y
F039971	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137388_1000774210	F026234	N/A	VADGSHSALSGQTSGGESPLLVSTIVCAYTQAELPTPWLAIFHRFERTMHKAGLRIRVRLFPLEELPSAFEVLVVPPELQAAAQALQTGARIIVTSRAEAPAAADLLLREIERGETLYAEKVRPGEPKIMTHRGGDIL*
Ga0137388_100077424	F039971	GGAG	MRIVAWLLVAAGLVVTGIGVAAALGQAGSGAQPWGNELSDNFVFIKALPFVLGFGVAVGLVMASTYGAKTRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGAGIVLFAVAAFVSYLWMTGDRSLLIRRGEWSRHLLGLAYELPRSLRGPYAKLLRIDLSQPPPPMGKFTFYEKVVELPSWSILLALITVTGLIKAGRYLIPVPGFVLWLASTLHVAAMVAIVIKLLDHLRYTFPRWSLMGAITTTWMKEQAPARRQGASERSGSSATGIAGGGDT*
Ga0137388_100077425	F021259	GGGGG	MRRLVALLGLVWSLANLGVAYFFLTSAFVAKTAAKEGILAQLSLLLGGALIAGFAILLARECVRMLTSADASETA*