Scaffold Ga0136610_1051977

Overview

Basic Information

• Taxon OID: 3300012184
• Scaffold ID: Ga0136610_1051977
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1481
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0306
  • Long. (^o): 163.7174

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042710	Metagenome	157	N
F083444	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136610_10519771	F042710	GGAG	MSENLDENCERSQNFTASSTVECRYLNLLRARAQELGLDSGVVGDKRKTETWEALLDSHGVAKPAKPKFVAKPNEP*
Ga0136610_10519772	F083444	GAGG	MLKDISEVFSVKEIALENIDLLPEYGEKVIYFVTAMQGESKTFLYIGFTINLRRKFKEHKRRIEFEFLNRIGYQVNIFWIVLPDEIREKEGQAVEMCYKRALEPKLNNEQNSFATVQAENRDQLKKQIEERRYEYLKKQIENWQQSGDDKDTIINKIWELCKKPFGDKHLNSVGR*