Scaffold Ga0136610_1001679

Overview

Basic Information

• Taxon OID: 3300012184
• Scaffold ID: Ga0136610_1001679
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7617
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0306
  • Long. (^o): 163.7174

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003047	Metagenome	510	Y
F057652	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136610_10016791	F003047	GAGG	MPEEKLMTGDTLIEEINTAYRRLGAAADNLARADRELTEHVRRVRLENAETILEARNERTASLYLDGLLDTEEHRRMEDDRARAELDLQHARREV
Ga0136610_10016795	F057652	N/A	MAVAIFGISVIVASRLFGPENILREVAIELLASFGSTILLFAIFGLVFRSGLQRLLRWAPGGQTFEESAERLRELLQGFDHQGREAEDSQDGEKLNRIEEGVRALSTDEVPRLKNEIQELRKMLAASGYGRGEKDFE*