Scaffold Ga0136556_1021534

Overview

Basic Information

• Taxon OID: 3300012182
• Scaffold ID: Ga0136556_1021534
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076655	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136556_10215345	F076655	GGAG	MIIEEAVNKLIRDVVNLVLGIEGYTIKAKQEDAPRPIGAYAVVDFLTSISLGWEQRYFEDNLADLDLTENISGLRNITMSINFFRDNAMDNSRKVRTALVRESTQSLFSSTGIGLVSRSDVRDIDNPTDDGWEERSQFDLVLNAVGTDADIVRSILVANITGEYQARGLAYNFNTEVQ*