Scaffold Ga0153922_1106157

Overview

Basic Information

• Taxon OID: 3300012181
• Scaffold ID: Ga0153922_1106157
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 641
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Brendon T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.9181
  • Long. (^o): -74.5218

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004042	Metagenome / Metatranscriptome	456	Y
F007884	Metagenome / Metatranscriptome	343	Y
F009247	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153922_11061571	F009247	GAG	VKEHLGRQSGVQKVEVSLIDGKVDVTPKEDGQIDPSQLLKATYDSGVTAAEMDVTAR
Ga0153922_11061572	F004042	AGGAGG	MDMRKLALLVLLGSTLAPASLAQIKHGEMRVEGMT*
Ga0153922_11061573	F007884	N/A	RLGSAVESRFWLSYRPYESKDVTREWFIGPALTWLHSQDDRIAGVTQHGSGGDVLLAGITTYAGVRPGMHVWVGVDWDVAHSTGATFMPVRRHISFGITQQFRFHVLGK*