Scaffold Ga0137338_1000005

Overview

Basic Information

• Taxon OID: 3300012174
• Scaffold ID: Ga0137338_1000005
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44386
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9515
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137338_100000515	F069394	GAG	MVALSMIKKAYAVQMTYDVSDEEKAQAEKAILFFNHAVKVLEIAQDHLNIMKTPFKDNPDMDPNEVMKARAAIRRFRDKSIENFNDFKKEAFKCVNAMHTFESDTQTLKLMKSFISSVDELETKVNDFSSLFDDLESKSFPQDAVQSMEAVQTQCDEVREIIDDRIKTHIQTNILATSWVDSVSNNYQLQIEEKTPLIIELFNKRQDQLNDAIKERSTQ*
Ga0137338_100000528	F071164	AGG	MRISEMLQAIASWLESPDNEALLLSEYHEDSMKIVAENCILAAALLKNAAEQVSEIEPPPVSNITEETIESTAILAAAFDASGDPQLKKQASVLDELLLSIAAPPNAYAERKDLQEQRLIELKKKYEDPGKELRENNKIADSEKAIDKSNMTKAYNILEAPLSTRYCPDHPGVQIARVGEHMWQCELDKKSYNFETGFELANGAKVPGGDVSQQTSSTYIPSHSIFDTREGRLGYNK*
Ga0137338_100000531	F038776	GGAG	MSKFQIDYSGLVNKMYKKAYRLSDVQDQLETVAFDIVRFKESDKGADLWQVQSAEDGDYIVAIYQPEEETKTSSWDVVYSKTAGAVQISYKGDPIVRIASSKLGIPTSELSKVQEYLPARLASNQKLVRALLNELPESTKKEVLSKYPEMLA*
Ga0137338_100000537	F042051	AGGAG	MTTFGEVNWNDDVFGGNEGKKNTNSKDLFLRLEEGSNEMRLVTQPFQYLVHKYKKEGDSGFGQKVSCSAIHGSCPLCDTGDKAKPRWLLGVISRKTGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSASDQKIKDDADLDDLKRRVTPPTSDIVQKRIDKINGVTDGSATVAKKSVTKAVAAAKPQAPAVNMAADEEEMGEAFPAYNGDA*
Ga0137338_100000541	F036462	AGAAGG	MVQHVRLGDFLGTELEEDFSNFDLTEIQLVLEKLQNTDAIDLAHAELLQQQALRGADILTEYLGKIVKTVGYLETKVNSTKNKVSLSYQAPDGARTTLDMKKWAGESAPEVEQVQIKLAIAKGSKLVLERKYEILVKAHHHFKDIAQGLRRTILGYSNGGTAGEKIPDGYE*
Ga0137338_100000543	F042607	AGGA	MSIRIVDNKKLDMTDDEWTMYQKIVKSYTAPPNKGEDYFKELFETDDNGIIVFLKPPSKFRTSFEVFLFLMSIMQHQHLRLMHQQVDDLVAQVKTKLPKG*