NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137342_1018290

Scaffold Ga0137342_1018290


Overview

Basic Information
Taxon OID3300012171 Open in IMG/M
Scaffold IDGa0137342_1018290 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1256
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.923Long. (o)-106.9516Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058233Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0137342_10182901F058233GGAGMRLRCASLVAALIFSFIAAPAFAQSKRGTWAGTSSTAQGTQPFTIVLDSTASGWKGAAVSPQMSDSLRLVEVRVRADTVEFGIPVNSATVYISGLVSGDKLSGSIWMQNNNVGSVDLRRKPAPEVKPPSGTP*

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