NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153990_1039180

Scaffold Ga0153990_1039180


Overview

Basic Information
Taxon OID3300012169 Open in IMG/M
Scaffold IDGa0153990_1039180 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1081
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Jones Lake State Park
CoordinatesLat. (o)34.5815Long. (o)-78.4487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018840Metagenome232Y
F032494Metagenome179Y
F067284Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0153990_10391801F032494GAGMMKQEYKYSTITRETVEKYKYLSFATETAFEYKYQIATETVERNTSKQVSAKETALQNVYNYSRIIFFFF
Ga0153990_10391803F067284N/AMDRAQVKAKAETARRFNARKVKQQTDIEWKAEILRKLDGLSEMSSMRKDIWRIAVALEKLAGMEGEDSNEE*
Ga0153990_10391804F018840N/ADRVAAVEQQRRKNWMKTFLPPSSPPSDEKMNLIDLLPLTKRQRVQYLPQETLEACQQHEELAREMGTSVVGGGSLCERCADFGILCIPQTLP*
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