Scaffold Ga0137352_1000002

Overview

Basic Information

• Taxon OID: 3300012164
• Scaffold ID: Ga0137352_1000002
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85617
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (76.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137352_100000253	F056282	AGAAG	MIIDKPIAGVKTDTRTHPPGKKGAHLSLREVADRAWVGRKSPRVRAWATQALAAAGVSTGGRRQKGQAILDAFRNKVPYIPDPVMGEFMATPEQTLCLDEGGLCIIGGDCDDAAITLSAAMMSIGIPAMIVGSSHKPPIDVPTHVYMAFQDDLGDWVKMDGTTKLPAGRVAPHSREWWVEPGETAKAAGEGDFVGMSGVDDSGTTDGALAGPLSPVELLYPFVR*
Ga0137352_100000256	F091541	AGGAG	MRQQTGLSIIGRRTHKYGDAQEKVRRIPFGYSKEPGTLGAPADMAQKCIRCSFGNIPVIEEVVWTIPLPLTPDEALATLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGVGVHVFCEPMSFSTIGNAFEAPSTTQEPPPSPDVFTTNDVFNGALGPEFAGAEPTQTAPVPAVFEFGAPVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEAAGTSEIPIIEFVAQVNATYRSKGGASIFLPVSFRRVGSVNATSATANAGIFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPVESPCFLERGIPIGMLFVVQDAVHQALMLESVTINNGALGSNVEPDENLSCFTNVGAGAATGTPTAAPITAGSGNNVMLEQTLDATPVLVQQQVNVCRQTFKGGILKLAIKIKGWEMPGGWKSWCSTNMPSVVATTSAG*
Ga0137352_100000257	F034408	AGGAG	MQPKDQNIKNLALYAPRVAFAMIAGVPRVPFINDIPIQFSSSTVNAPPVVQSFLNNVTQDTIIERVAFNLFQQNSFPGSPFQSLYFNQLKQSGQTGVGVQMAVYGGPKYNVNDTFTDLGNLVDVFAMTWPEGWPLYKQSNIKVSAILLQTPVSVPFNVTLTFLGWQFLDKAIDDMSDKEARDRLRKLGIETPDLETLLK*
Ga0137352_100000265	F061612	AGGAGG	MPKVVHQETMCCGHKKCPTVTVFEDGSMEITDNDAEKGSVGTIKLASEQVARLTELAKNAK*
Ga0137352_100000267	F074512	GGA	MVLFVLLSALIGTTLIVVRSALFRPIRKLWPALLSCSRCTGFWVGVAAGASGLVETGHGRPIDAYIVGAATSFLALLADAVFIQLLGPPEESH*