Scaffold Ga0153939_1004471

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0153939_1004471

Scaffold Ga0153939_1004471

Overview

Basic Information
Taxon OID	3300012162 Open in IMG/M
Scaffold ID	Ga0153939_1004471 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ023 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4896
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New Jersey, Brendan T. Byrne State Forest
Coordinates	Lat. (^o)	39.873	Long. (^o)	-74.5232	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083492	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153939_10044712	F083492	GAG	MLQNAHQGTFLLLKNYIDQVLNGAINHYNGALITAYNRIATLEAKVTHLWRELTRLPGGYIASKTKVPEPPTFIGSENKMHLHNWLS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.