Scaffold Ga0153920_1054025

Overview

Basic Information

• Taxon OID: 3300012156
• Scaffold ID: Ga0153920_1054025
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ004 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 811
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Brendon T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.9181
  • Long. (^o): -74.5222

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023497	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153920_10540252	F023497	AGGAGG	MGPWRDPNAMDVNRGRGGDRTCYHCGKFGYMAWNCWERNKARVVETPQELAKENGGQ*