Scaffold Ga0153938_1072727

Overview

Basic Information

• Taxon OID: 3300012151
• Scaffold ID: Ga0153938_1072727
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ022 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 582
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA:New Jersey: Brendan T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.8727
  • Long. (^o): -74.5215

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008928	Metagenome	325	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153938_10727271	F008928	N/A	DKCPYKTSSQKPSPLGPSKNKNQSFRVWLMKMLEEDSDDPDFPPEDIKINSISIEEIPDPVPPSGKRKRTPKLDVLLRL*