Scaffold Ga0153940_1017825

Overview

Basic Information

• Taxon OID: 3300012148
• Scaffold ID: Ga0153940_1017825
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ024 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Brendan T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.873
  • Long. (^o): -74.5218

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010439	Metagenome	303	Y
F049334	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153940_10178251	F010439	N/A	EFFIGLDYYLYYFTVAVLLLVHGHMIFQNVLWSLDLVT*
Ga0153940_10178257	F049334	N/A	VKAVEELKKAGIKTLKDEEWEIEDGIVMKEGRIYVPEGKLRGKIIQLHYNIPVGGHRGR*