Scaffold Ga0136588_1016928

Overview

Basic Information

• Taxon OID: 3300012147
• Scaffold ID: Ga0136588_1016928
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. JXAS1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046755	Metagenome	150	N
F072922	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136588_10169281	F072922	N/A	QGKQGGTGQVTFSAESGGTLNVPSVFLAETAEQHCFFGIRTDGSNVSTILGTLKLA*
Ga0136588_10169283	F046755	N/A	MKLTTVQNITNEKWKQQAERFSSIADAVNSLTFPKKDVNEMPAIIEMTVVQPLSQGFKGRVIYTQQFEKIIETQSEIFDDLGNPTGEYETIETAIIKKHVVVDYYETIP