NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136588_1009977

Scaffold Ga0136588_1009977


Overview

Basic Information
Taxon OID3300012147 Open in IMG/M
Scaffold IDGa0136588_1009977 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2031
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015885Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0136588_10099773F015885N/AMTIGCNSIVDCVLKNCANLVPGIKDLAYFINLECIDKDLSTFDPSNPLLLTQLVLKTMSPPCHAFCVTGYNFSNEHTTAMVKKTYQKVWDHNFIFRIFDNTPEDKLWIENAKDSRFVVIIENNYNKVDPNGVLPTGRTVFEVLGWDFGLELNAAERNVDDEDMLGGWLLTAGGSDKLKESYMPRTLFVGDSIELTRAAIESLVAPCCP*

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