Scaffold Ga0153996_1048626

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153996_1048626

Scaffold Ga0153996_1048626

Overview

Basic Information
Taxon OID	3300012144 Open in IMG/M
Scaffold ID	Ga0153996_1048626 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	892
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Lumber River State Park
Coordinates	Lat. (^o)	34.917	Long. (^o)	-79.3533	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F068319	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10486261	F068319	N/A	VEPSEFHGVDPATISHINDDPDWVDAPIPVPTPAFQTPPVADHNPINNQLAKALRQISENLNKGSAPKPHQSKARIPDTFDGSDPHKLNHFL
Ga0153996_10486262	F000523	GGA	MYLAMIERRLRRTVKDVGAENDLLNDLGFNLCVAPRSLVVRLVVYFGVVEVAETEALSGQVEESERIRTR*

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