Scaffold Ga0153996_1005887

Overview

Basic Information

• Taxon OID: 3300012144
• Scaffold ID: Ga0153996_1005887
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3838
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001585	Metagenome	667	Y
F029613	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10058871	F029613	GAGG	VLEGNRRYSGVMCEGSSYIYLPSKIAASQSNGSRIENGIKVCPVDVSWGGWVLLIVLHNEVWCLDIGGCLPRVVFSAKTLPLDQELEPPPVPATI*
Ga0153996_10058873	F001585	N/A	VVGDNTFQEAVELPDIVKKESGCSFHCDHCVYRNKVYSLGDGIYNSHDGVMSRGLQEFDHKIDTKRIPPCIRNREWLKLTNWRVSLGFCPEAEITGTYILADIPRYLRPPVVLGHQF*