Scaffold Ga0153996_1004001

Overview

Basic Information

• Taxon OID: 3300012144
• Scaffold ID: Ga0153996_1004001
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4952
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008009	Metagenome	340	Y
F013968	Metagenome	266	Y
F015953	Metagenome	250	Y
F017770	Metagenome	238	Y
F028987	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10040011	F017770	GAG	MASSSNLGTGSIFMCQEVKGLLSLAWAVPEVNRVIRVIGEETPKGLDNGKGVDLV*
Ga0153996_10040012	F015953	N/A	MSKEVVLTTLSQIANNSASRTIARSANTLDDNTCSLSLQKWATEIACMFLGGMTLASVAITSVDGSEEAS*
Ga0153996_10040013	F008009	AGGAGG	MTKTVKSIELEFASMPIGAVTGMERDMIRKVVQQPISWAYLRVK*
Ga0153996_10040015	F013968	N/A	VIERREELCNVKGDHTSLEALGLARANQVSKEKSSIFSRPLSNATELVGMKDTMLDSIKLESSSNHLLNELAKGVEQNNGLKGLRSVIGWFARLGNNDKN*
Ga0153996_10040017	F028987	GAG	MFQETMEFPDVMEEESGCSFHCDYCVRRNKVHSFGDRVHDSHDGVMSGGLREFNHEIDTEYVPLFIWNGEQMELANKRVSPRFCLEAEVTGTHILANIPRHLGPPVILGH*