Scaffold Ga0153996_1002931

Overview

Basic Information

• Taxon OID: 3300012144
• Scaffold ID: Ga0153996_1002931
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6103
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022564	Metagenome	213	Y
F032107	Metagenome	180	Y
F098375	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10029312	F098375	GAG	VDWGFPLHTAWAKDLGAYLGTWGLVATFAGVGLAVAVLAGRGRGGALNTTGAGVGTFWEGAEELVEGGTFLLPLFFLLVTVVKKASSTAG*
Ga0153996_10029313	F032107	GGAG	MSWNDQVSAEKSRGLVSGVICASQAPLLTSLMPHGPNHGTAESFSLVEGGSAVAGICDTLVIYDCNSLPQALQQVTSDIVTHDVTYNCDWWDGEHHVTSLSGYFGYLENNAKVLALFVLCIARFIQKHPIGSHPIEQFPPILGVGSIM*
Ga0153996_10029314	F022564	AGG	VFIPEDALMLVALSDAPSGVSQLLRTLEKHLLSPLLPLRRRKVKRKRSVLVPGHLLPLGLLQASSLIELPFSSSLLLPLPLLLKGEHIL*