Scaffold Ga0153996_1002296

Overview

Basic Information

• Taxon OID: 3300012144
• Scaffold ID: Ga0153996_1002296
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7185
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034778	Metagenome	173	Y
F080718	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10022962	F034778	N/A	VVGGAFQYVDCICFRINREEVKPELLLKISSGLDRENASVRFLMKHIFGLLGGMTSFEEHESPENPFFFVMELLRGQADVERAGVQKCVAVVMFSTEVWRTRELGTCSFRC*
Ga0153996_10022968	F080718	GGA	MKDIVELHTSDVSRSPQVFAMELCCQFWCRDFRGRLPRIVFAAIPFLLDEILESSLVPTTVEYLLYFPLCFSVNDYGQWVVFCSPSCDWVFWGRSKLHYVKHWMELLYPVWQF*