Scaffold Ga0153996_1002173

Overview

Basic Information

• Taxon OID: 3300012144
• Scaffold ID: Ga0153996_1002173
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7424
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F017427	Metagenome	240	Y
F029616	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153996_10021735	F000523	N/A	VIAEPERRLWQTGKDVRVENNLLNDLGFNLCVAPQSPVVRLVMYFGVREVVKTEVLSGKWRSQRE*
Ga0153996_10021737	F017427	AGAAG	MHSPKGNFTGNDTTLEIILFKVPSNRRSSTEGVGVVGRECLQAKAESKKQCVDPESTSIWMGIGWR*
Ga0153996_10021738	F004107	GAGG	VSDRNVSDGVNCRGFSAGENGRFTKVSTGGTEAGLWSKDGGQKDIDLETQSINRL*
Ga0153996_10021739	F029616	N/A	MGIFFQIDSEVVRMVGSECFCFGLAKDICILVIFLWNGREIDFFGDSSGFGLYCGTELESKYF*