NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153996_1000944

Scaffold Ga0153996_1000944


Overview

Basic Information
Taxon OID3300012144 Open in IMG/M
Scaffold IDGa0153996_1000944 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12289
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: North Carolina, Lumber River State Park
CoordinatesLat. (o)34.917Long. (o)-79.3533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000591Metagenome1003Y
F002577Metagenome546Y
F029615Metagenome187Y
F039422Metagenome163Y
F050815Metagenome144Y
F057023Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0153996_10009441F000591GGAVKDVVELCASDMSQSSRVFAMELCCEFWYGDFGSGLPGIVFVAVFFPLNEVLESSLVPTTVEYFLYFSLRFSIDNYGQWVVLHRASCNWVVRGRSKLHYVEHWMKLLHLAWQS*
Ga0153996_100094410F029615N/AMRTSIDRAVGGGFGMTRGDRTRGNLATDNGRGQAETALSDAEEAEHDMD*
Ga0153996_100094411F002577GGAGLEAVQIVVYHSISLVVGSSFQSIDRVHFRICRKEVQPELLFKFSLDLDRKNTSVRFLMEYVFGPLGNMTSLKEHEGPEDLFLFIMELLWG*
Ga0153996_100094414F050815N/AMGVLMDVDATKKARSLPPQECYQYRNTNHVVWDCPHCMDIYQLTTEQWKELIEDLLALKDVVLIKESCSLEEKNFV*
Ga0153996_100094415F057023AGGAMKLELLLKISLGLDKENASVRFLTKYIFGPLGSTTSFEERESPENPFFFVVELL*
Ga0153996_10009449F039422GGAGVSVVPISTGRSREVPHVSRVLIEKSLGSLFSYLGLRSRAKTRGIEGSASTSSLSIVFRSSIVNTVNLFTGDRGALIAGHAMQNPLPLGDKTLLSELYLSTPTDLQSTPPTALW*
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