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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012144 Open in IMG/M |
| Scaffold ID | Ga0153996_1000489 Open in IMG/M |
| Source Dataset Name | Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17896 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina, Lumber River State Park | |||||||
| Coordinates | Lat. (o) | 34.917 | Long. (o) | -79.3533 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002193 | Metagenome | 584 | Y |
| F029614 | Metagenome | 187 | Y |
| F034778 | Metagenome | 173 | Y |
| F083490 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153996_100048913 | F083490 | GAG | MGSFYKFLGDRRGSTKVFCSRFWENPRHEESVLLLVFNLAYLEGGLVFFRVFCIFRRGSESTDVDGSGLHFPLQRLFLSYRAASFTSRGAPIHLHFPGLPIDLRIMVLEPGVAKDHALLSEVRDSKERPFGVGLITEDYIHYFGDLSCFVRGAVHVEHRYGTRDALGTNTFRTDKILVYEVAGGSGVQKRFDRMHLTGVGGTNLYRQDNRCSAGVEGVGRESSGEFFFPFGPPRQGCPDRSRGEERGCVYRFTNFCIDFFYV* |
| Ga0153996_100048914 | F029614 | AGG | VVQVIVYRPVSLVVQEAFQSINGICFCIDWEELTPELLFEVGPRLDRKNASVRLLAKEVLGPPRGMSVFEKGECPKDFLLITAELLRSQV* |
| Ga0153996_10004893 | F034778 | N/A | LVVGGAFQHVDCVCFHINREEVKPELLLKISPGLDRKNTSVRFLIKYIFRPLGSTTSFEERESPENPFFFVVELLWGQADVEGAGVQKYMAIVTFSTEVRGTRELGICSSRCRRRGQRYQRRWYRQGRCV* |
| Ga0153996_10004899 | F002193 | GAGG | VIRDDTFWEAMEFPDIMEEKSGCSFRCDRCVCQNEVYSFGDSIHDCHDGVMSRGLREFDHKIDTEGIPPCIQNGEWLKLANRRMSPRFHLEAEVASTHIGYIWDHQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |