NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153958_1053898

Scaffold Ga0153958_1053898


Overview

Basic Information
Taxon OID3300012141 Open in IMG/M
Scaffold IDGa0153958_1053898 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Boletales → Coniophorineae → Serpulaceae → Serpula → Serpula lacrymans → Serpula lacrymans var. lacrymans → Serpula lacrymans var. lacrymans S7.3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Wekiwa Springs
CoordinatesLat. (o)28.709Long. (o)-81.4873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006171Metagenome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0153958_10538981F006171N/AMWYYGLEENDLNASARIVLHILLCITFCCFQREKMGGIQEFQSVGLNLENEERMQGKEMGRNGLTHRWFLIDATMPIVFMSGMVLSHLSSMVESSFSSLLLMHGQIVSREDLTGLGHINILLDLSFTRDYRMLLCMIGMMEKMLGFWGANSFFPLLM

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