NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153958_1004276

Scaffold Ga0153958_1004276


Overview

Basic Information
Taxon OID3300012141 Open in IMG/M
Scaffold IDGa0153958_1004276 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4005
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Wekiwa Springs
CoordinatesLat. (o)28.709Long. (o)-81.4873Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021900Metagenome216Y
F039422Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0153958_10042762F039422GAGVSVVPISTGRSREVPCVSKILIEKSLGSLFSYLGLWNGVGTRGLGGSVSTSSLLIVLGSSIVNTVNLFTGDQGILIASCIMQNPPLLGDKTPLTELHLSMPTDLQSTPPTVPR*
Ga0153958_10042764F021900N/AMDSQLGFALEPFLYLQNVVLYNKYIEQVIINLELMLRAREAIKMNWHWVTKRATERLCSRSTLGWTNLERW*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.