Scaffold Ga0153958_1004276

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153958_1004276

Scaffold Ga0153958_1004276

Overview

Basic Information
Taxon OID	3300012141 Open in IMG/M
Scaffold ID	Ga0153958_1004276 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4005
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Wekiwa Springs
Coordinates	Lat. (^o)	28.709	Long. (^o)	-81.4873	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021900	Metagenome	216	Y
F039422	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153958_10042762	F039422	GAG	VSVVPISTGRSREVPCVSKILIEKSLGSLFSYLGLWNGVGTRGLGGSVSTSSLLIVLGSSIVNTVNLFTGDQGILIASCIMQNPPLLGDKTPLTELHLSMPTDLQSTPPTVPR*
Ga0153958_10042764	F021900	N/A	MDSQLGFALEPFLYLQNVVLYNKYIEQVIINLELMLRAREAIKMNWHWVTKRATERLCSRSTLGWTNLERW*

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