Basic Information | |
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Taxon OID | 3300012141 Open in IMG/M |
Scaffold ID | Ga0153958_1004165 Open in IMG/M |
Source Dataset Name | Attine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4059 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida, Wekiwa Springs | |||||||
Coordinates | Lat. (o) | 28.709 | Long. (o) | -81.4873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013385 | Metagenome | 271 | Y |
F029617 | Metagenome | 187 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153958_10041654 | F013385 | N/A | MLPMLIPLAPRLSLLVLVSLQTHSILFLVPALGLANASIPEDALVFVALSDAPPGVSQLLRTLGKHLLSLLLPLRRRKVKRRRSVLAPGHLLPLGSLQVSSLTELPLSSSLLFPLPLLLKGEHIL* |
Ga0153958_10041657 | F029617 | N/A | MFPDLPMKKVLAMHQSGFGASASPNKGGAVYSGASRAPKMTTHGPTRRQVLIPLDISTAEVIVANAVTAVESCNRGLVEAHSKLRVESVCKAWDGI |
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