Scaffold Ga0153958_1000596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0153958_1000596

Scaffold Ga0153958_1000596

Overview

Basic Information
Taxon OID	3300012141 Open in IMG/M
Scaffold ID	Ga0153958_1000596 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9486
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Wekiwa Springs
Coordinates	Lat. (^o)	28.709	Long. (^o)	-81.4873	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023765	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153958_100059612	F023765	AGG	LKKAQPELRSLEKLGGEESFGLVHCLDGADRTDKGGLTGDRDVGIRGGATVGAGAGPVIS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.