Scaffold Ga0153958_1000253

Overview

Basic Information

• Taxon OID: 3300012141
• Scaffold ID: Ga0153958_1000253
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12767
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Wekiwa Springs
• Coordinates
  • Lat. (^o): 28.709
  • Long. (^o): -81.4873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001569	Metagenome	669	Y
F002648	Metagenome	539	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153958_10002536	F002648	N/A	LKKARVHKIFFSSQLNCSGARHRYNVQELKKARPELHLPEKFGREGSFGLIRCLDRVDRTGEGGLTGGGDMGIGGRVTVGTKAVMS*
Ga0153958_10002538	F001569	N/A	MASFALRGAPVYLHFSGLPIDLRIMVLEPGVAEDHALLPKVGDGEKRPLRVGLITENYVYHFGDLLCFVREAVHIEHWYGARDIPGANTLRTDKVFVYKVACSSRVQKYLDGMHLASVSGTDLNRKDGKCSASVKGIGGESSE*