Scaffold Ga0153961_1009415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0153961_1009415

Scaffold Ga0153961_1009415

Overview

Basic Information
Taxon OID	3300012139 Open in IMG/M
Scaffold ID	Ga0153961_1009415 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2147
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Withalacochee
Coordinates	Lat. (^o)	28.571	Long. (^o)	-82.2846	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014093	Metagenome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10094151	F014093	GAG	MRKRQKNLGNRSWKKKRRNLAGNYQGSSQLNYYTVGGEKDIKGKERRGGTRIGVNGKIPWDEES*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.