Scaffold Ga0153961_1002834

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1002834
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4165
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011465	Metagenome	290	Y
F022565	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10028346	F022565	GAG	MTIKEKEKLRTVRDYILIGESGPIAFKNQAIVRPSIEWITVLSPIYSLFILLRKVFTIFSIDHTLGLGIVNTIWTI*
Ga0153961_10028348	F011465	N/A	MGGIQEFQSVVLNLENEGRMQGKEMGRNELAYRWSLIDTTIPIVFISEMVLSHLSSMVESCFSSLLLIHGQIVSRENSTGLEHINILLDLSFTRDYRMLLCIIGMMEKMLGLWDTNSFFLLFIRATGAQDSRRILSQYYS*