Scaffold Ga0153961_1001831

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1001831
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5249
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000709	Metagenome	925	Y
F002193	Metagenome	584	Y
F029614	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10018312	F002193	GAGG	VIRDDTFREAMEFPDVMEEESGCSFCCDHHVRWNEVYSFGDSIHDRHDGIMSRGLWEFDHKIDTEGIPPCIWNGEQLKLINRRMSPRFCLEAEVASTHILADVPRHLGPPVVPEH*
Ga0153961_10018316	F000709	N/A	MASFILRGASIHLHFSGLPIDLRVMVLEPGVAEDHALLPEVRDGKERPFGVGFITEDYIHYFGDLSCFVRGAVHIEHRYGTRDAPGTNTFCTDKILVYEVAGGSGVQKRFDGMHLTGVGGTDLYRQDDRRSAGVEGVGRESSWEFFFPFGSPRQGCPDQSGGGERGCVYRFTNFCIDFFYV*
Ga0153961_10018317	F029614	N/A	LVVRGAFQSVNGICFCIDWEELTPELLFEVSPRLDRKNAGVCLLAKEVLRPPHGTSVFEKGKCPKDFLLIAVELLRSQA*