Scaffold Ga0153961_1001551

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1001551
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5653
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F015423	Metagenome	254	Y
F086400	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10015511	F000523	GGAG	MLERDILSDDKRRLRWTVKDVRVENDLLNDLGFNLCVAFQSPVMRLVVYFGVVEVIKTEALSGQVEELERIRCD*
Ga0153961_10015513	F086400	GGAG	LQGGKELSHSTLFSVVTVCCLLLHIAETVSFAISFPVAIVEGDYQLIHGMEGGGFFLLPVRYQVLEVIWQSLIKAMA*
Ga0153961_10015514	F015423	AGAAG	MHSPEGNFTGNNTTSEIILFEVPSNRRSSTGGVGVVGRECPRAKTESKKQCIDLEFTSIWMGIGWRWSGAHTRGETRGIQREFGSERVDALRHIGLIVAQTSSIRLPVCAESWEPCSSFLRGSRRVESLVPPE*