 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012139 Open in IMG/M |
| Scaffold ID | Ga0153961_1001487 Open in IMG/M |
| Source Dataset Name | Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5787 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida, Withalacochee | |||||||
| Coordinates | Lat. (o) | 28.571 | Long. (o) | -82.2846 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000977 | Metagenome | 815 | Y |
| F002648 | Metagenome | 539 | Y |
| F019262 | Metagenome | 230 | Y |
| F021220 | Metagenome | 219 | Y |
| F088011 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153961_100148710 | F019262 | N/A | MLQLISRRFLRELDKAPGGNNLQYILKCSCILFFGNQRLHNEIVLGGNGGHSGVICEGSPYIYPLSKVAASQSNGSGIENGIEVCPADVSWGSWVLLIVLHDEVWCLDTGSYLPRVVFSAKTLSLDQELEPP* |
| Ga0153961_10014873 | F002648 | N/A | MPVSTSWQKRFLDHFTAHLSLKKARVQKIFSSLQVNCSGARHKYSMQELRKARLELYSPEKSGGEGSFGLAHCLDEAARAEERGLTRGGDAGIGGEAIVGAGAGLVISWVICCI* |
| Ga0153961_10014875 | F088011 | AGGA | LDIQRLTAEQREELIEDLMALKDAVEEEEVCSTQEEGFV* |
| Ga0153961_10014877 | F021220 | N/A | MLKSSWGEEGNEGIRKKLKYEAQLICNVKIVEMMVGLI* |
| Ga0153961_10014879 | F000977 | GGA | MTSRQQIKSLSVTSDPITAGLSQETDTPADDDHIANARTHCHIFLDRIWSRRKPVQGSGNDGQE* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |