NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153961_1001480

Scaffold Ga0153961_1001480


Overview

Basic Information
Taxon OID3300012139 Open in IMG/M
Scaffold IDGa0153961_1001480 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5812
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.571Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F001585Metagenome667Y
F038021Metagenome166Y
F049332Metagenome146Y
F057804Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0153961_10014802F001585GGAGMELPDMVKKESGRSFCYNCCVHRNKVYSLGDGIYNSYDGIMSRGLQEFNHEIDTKCIPPCIQNREQLKLANWRVSPGFCPEAEITGTYILANIPRHLRPPVVLGHQF*
Ga0153961_10014804F049332AGGVSRKRIETRALNVCQSGSLPEYAEDLEEDKAPVWTREAEYKPGDQLFMTRILPESTAEDLCATFTISQKLVEGAH*
Ga0153961_10014805F000383N/ALFLLYHTAFFALRRASVHLHFSGLPIDLWVVVLKPGITKDHVLPSKAGDSKEHPFRVGFVTENYVYHFRDLTYLIGGAIHVVHQYGTRDAPGVNTFRSDKISIYEVARSSRIQKYLNKIHLAGVYGADFY*
Ga0153961_10014807F057804N/AMSMGISPDSKGGEGLGGTESRAAREERSIEKGVGRAGAEHTEVTVVDWSMDWNASFANCTWSILWAAAYQASRSVSVGRLKDMVAI*
Ga0153961_10014808F038021N/AMLYLHPAPEQFIYDKEKIFWTLTFFKDGCAAKWSENLFCQEADTGIFSI*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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