Scaffold Ga0153961_1000573

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1000573
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9489
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015172	Metagenome	256	Y
F075516	Metagenome	118	Y
F078054	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_100057311	F075516	GAGG	VDGDGDLAMEDDALGGFRELREGAVCGRAVNDWERDRTEFCEEAAY*
Ga0153961_100057313	F078054	GAG	VEGSTPWNSEGSTGSGDEQGHTGVRGVPNWRRLDLLRRLEVKRPIVQLVRGMELLPEEGAVDW*
Ga0153961_100057314	F015172	GGAG	MSGRDVLSDDRKKTPAMRQERQGRERLIERPWLQLICCALVSSREVGHIFQSKGSRQDRGPKESSEGAGVDKMRLGPDDVNLQTKELHGNYSVLIVSAE*