Scaffold Ga0153961_1000294

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1000294
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14105
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016096	Metagenome	249	Y
F032495	Metagenome	179	Y
F039421	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10002944	F032495	N/A	VVGGPFQSIDCIHFHIDREEVDPELLFEVLLGLDGKDAGVCFLIKHILGPFGGATTFEKREGLKDFLLFIVELLWD*
Ga0153961_10002946	F016096	GAG	MDIRQLTSEQREELIEDLLALKDAVPSEESGPPEEKDFA*
Ga0153961_10002947	F039421	AGAAGG	MQLAISAPRSPVNKFTVLTIEDPNTIDSELVDAQPLNPLAAAPLRRPKWEKRLPKLFLISALDI*