Scaffold Ga0153961_1000273

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1000273
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14916
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000591	Metagenome	1003	Y
F070728	Metagenome	122	Y
F080719	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_100027315	F080719	N/A	MDIHQLTAEQREELIKDLLALKDIVPIEESCPLKEEEDFA*
Ga0153961_100027316	F070728	N/A	MSIGIPIDGKGGRDFEVTRRDRIGGNLAIDRGEGQAEMVLGGAEEAECDMD*
Ga0153961_10002738	F000591	N/A	VEIELSSYIHPPFKIATSQSNRLRMKNVIELRVLDMSWSPRVFAMELYCQFWSGDFGGRLPGIVFVAISFSLNEILESSPVPMTVEYLFYFLLHFSVDDYRQWVVLHFLACNWVVRSQSKLHYVEHWMKWLYLVWQL*