Scaffold Ga0153961_1000131

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1000131
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28963
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (30.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001585	Metagenome	667	Y
F002577	Metagenome	546	Y
F019262	Metagenome	230	Y
F029615	Metagenome	187	Y
F071825	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_100013116	F019262	N/A	MLQLTSRRFLRELDEAPGGNNLQYILKCPCIPFFGNQGLHNEIMLGGNGGRSGVMCEGFSYIYPPSKVAASRSNGSGIENGVEVSLVDMSWGGWMLPIVLHNEVRCLDIGGYFPRVVFSAKTLLLDQELEPPLVPVTI*
Ga0153961_100013117	F001585	GGAG	MELPDVVKKKFGRSFRYDHCVCQNKVYSLGDGIYNSHDSIMSRGLWEFNHKINTKCISLCIWNGEWLKFANWRVSPEFHLEAEITGAYILANIPRHLRPPVVLGHQF*
Ga0153961_100013146	F029615	N/A	MGTPIDGVASGGGGARGNLATDNGRGQAETVLSNAEGAEHNID*
Ga0153961_100013147	F002577	N/A	VIESSFQSVDHVRFRVCRKEVQLELLFEFSLGLNGENTSVRFLTEYIFGPFGSTTSLEEHEGPEDPFLFVMELLRG*
Ga0153961_100013148	F071825	GGA	VSWEEHRIYPELDLGRRGRRNSGRLRRGQQAGKAWLGAYLDCITPVRFGVGGADKGATECGGFMSDQLTVFSRGAFVTVYKG*