Scaffold Ga0153985_1059535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153985_1059535

Scaffold Ga0153985_1059535

Overview

Basic Information
Taxon OID	3300012136 Open in IMG/M
Scaffold ID	Ga0153985_1059535 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA069 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, Alexander Wildlife Management Area
Coordinates	Lat. (^o)	33.0113	Long. (^o)	-81.8994	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016095	Metagenome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153985_10595351	F016095	AGGAGG	MKRMRARTRRLKTAVSVYNPLKRSRPDHCARKGRRSRVSRCPGGAPYHHYGLARIGNSEIFFVSLSLLSLCFVIIIKYSRAQEGNQASYPHHHPSLLL*

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