NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153985_1019866

Scaffold Ga0153985_1019866


Overview

Basic Information
Taxon OID3300012136 Open in IMG/M
Scaffold IDGa0153985_1019866 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA069 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1398
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Alexander Wildlife Management Area
CoordinatesLat. (o)33.0113Long. (o)-81.8994Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F049332Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0153985_10198662F000383N/AVILKPGITEDHALPSEAGDSEERPFGVGFVMENHIYHFRDLTCLVGGAVHIVHWYGARDALGVNTFCSEEVLIYEVACSSRVQKHLDEMHLTGICGADFYWQDDRRPTSIKGIDKESFG*
Ga0153985_10198663F049332GGAMETRALNVCRSRPSLEYAKDSKEDEAPIRTREAEYEPGDRLFMTRILLDSTMEDLRAASMTSQKLAEGA

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