Scaffold Ga0153982_1024850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153982_1024850

Scaffold Ga0153982_1024850

Overview

Basic Information
Taxon OID	3300012135 Open in IMG/M
Scaffold ID	Ga0153982_1024850 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA066 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1161
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, Alexander Wildlife Management Area
Coordinates	Lat. (^o)	32.8826	Long. (^o)	-81.9512	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022564	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153982_10248502	F022564	N/A	ALVLVALLDAPPGVSQLLRSLGMHLLSSLLPLRRRKVKRRRLVLVLGHLLPLGSLQASSLTELPLSSSLVLPLPLLLKGEHIL*

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