Scaffold Ga0153982_1005876

Overview

Basic Information

• Taxon OID: 3300012135
• Scaffold ID: Ga0153982_1005876
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA066 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2921
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, Alexander Wildlife Management Area
• Coordinates
  • Lat. (^o): 32.8826
  • Long. (^o): -81.9512

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000709	Metagenome	925	Y
F034423	Metagenome	174	N
F100120	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153982_10058761	F100120	N/A	AVADALGYLQHHLQELTERQNASEHVINNTLAGLTAQIQ*
Ga0153982_10058763	F034423	GGA	MLTAEQREELIEDLMALKDVAVEEEVGSSPEEDFV*
Ga0153982_10058764	F000709	N/A	MVLEPGVAEDHVLLPEVGDGEERPFGVGLITEDYIHHFGDSPCFVRGAVYIEHRYGTRDAPGTDTFRTDKILVYEVAGGSGVQKRLDGMHLAGVGGTDLDRQDNRRSVGVEGVGGESFGESFLPFGSLRQGCPDRSGGGEKGCVYRFTNFCIDFFYV*