Scaffold Ga0153982_1000520

Overview

Basic Information

• Taxon OID: 3300012135
• Scaffold ID: Ga0153982_1000520
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA066 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10568
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, Alexander Wildlife Management Area
• Coordinates
  • Lat. (^o): 32.8826
  • Long. (^o): -81.9512

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004107	Metagenome	452	Y
F007675	Metagenome	346	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153982_10005202	F004107	N/A	M*GHLVLNRNVSDVVNCRGFSAKGNRGFTKVSIGGIKARF*SKDGSQKDVDPETQSINRL
Ga0153982_10005208	F007675	N/A	MMGAQSRSYLHGVPKMFIFTHCNKLTSRIVSKPLMGLTTLNQVLIRTPTPNLMGVIQSELMISQAFQACYSIEDCLSDRCVLSYERVGYIVENIHQLNLSLRSPLTHSRELHLQPQELLR*RQGPRRLSLSISTLRNIL*