Scaffold Ga0153997_1002144

Overview

Basic Information

• Taxon OID: 3300012126
• Scaffold ID: Ga0153997_1002144
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC081 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5359
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: North Carolina, Lumber River State Park
• Coordinates
  • Lat. (^o): 34.917
  • Long. (^o): -79.3534

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038928	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153997_10021441	F038928	N/A	IIMIPLAIIMAFLTTIITLFFNPLSNAWKDLKTETKDVYMTSVQNFIKEVKKDFADKPTKRQMKEPDDFKGSPDEVRAWCRRMTLFFQSNDISKEWERIEMALGKIKGGKDKRAQQ*