Scaffold Ga0154006_1035397

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154006_1035397

Scaffold Ga0154006_1035397

Overview

Basic Information
Taxon OID	3300012125 Open in IMG/M
Scaffold ID	Ga0154006_1035397 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL090 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Florida, Wakulla State Forest
Coordinates	Lat. (^o)	30.3423	Long. (^o)	-84.2548	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005805	Metagenome	389	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154006_10353971	F005805	AGGAG	MIATLQQQVNTMLLQQQGSRVEVARPQVFSGRMEEVSAFVNAARLYIRMKMTEEAAATQV

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