Scaffold Ga0153968_1016359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153968_1016359

Scaffold Ga0153968_1016359

Overview

Basic Information
Taxon OID	3300012123 Open in IMG/M
Scaffold ID	Ga0153968_1016359 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA052 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1375
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, George L Smith State Park
Coordinates	Lat. (^o)	32.5456	Long. (^o)	-82.1225	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005969	Metagenome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153968_10163591	F005969	N/A	YSTLYTGFVFRVSVIRAKLVCLSITSEQARVAPEYCHAA*

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