Scaffold Ga0153968_1013259

Overview

Basic Information

• Taxon OID: 3300012123
• Scaffold ID: Ga0153968_1013259
• Source Dataset Name: Attine ant fungus gardens microbial communities from Georgia, USA - TSGA052 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Phallomycetidae → Geastrales → Sphaerobolaceae → Sphaerobolus → Sphaerobolus stellatus → Sphaerobolus stellatus SS14 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia, George L Smith State Park
• Coordinates
  • Lat. (^o): 32.5456
  • Long. (^o): -82.1225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000709	Metagenome	925	Y
F008737	Metagenome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153968_10132591	F008737	GGAG	LKGFVGEPRLVDPLGRYVPGLRISVSGPSEGHSGDLVLNVRSEASVELHHKSPGVSVSGVGDQGEEAVQVIVHRPVSLVVHGAFQSVNGIGFCVDQKELTPELLFEVSPRLDRKNAGVRLLAKKVFGPPHGTFVFEKGEGPKDFLLIAAELLRSQA*
Ga0153968_10132592	F000709	N/A	IDLRVMVLEPGVAEDHVLLPEVGDGEERPFGVGLITEDYVHHFGDLPRFVRGAVYVEHWYGTRDAPGTDTFRTDKILVYEVASGSGVQKRFDGMHLAGVGGTDLDRQDDRRSAGVESVGGESFGESFLPFRSSRQGCPDQSGGGERGCIYRFTNFCIDFFYV*