Scaffold Ga0136565_1024014

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136565_1024014

Scaffold Ga0136565_1024014

Overview

Basic Information
Taxon OID	3300012121 Open in IMG/M
Scaffold ID	Ga0136565_1024014 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	683
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep lake
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006730	Metagenome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136565_10240141	F006730	N/A	TKVYSADTQSFVGVGITDYNQLENRIADYSQLENRIIGTEVDEYIDGTAGQVESKGFQTPTNYASSDSRAGSDWGTVSDSGTLTDGLENYVGYFIDSYEYEIYISLQGSLRPPDTNVSFTPSGGLTRVNGLNIPTDPEDTINYWEKNIGDEYTLLLSDSANFDPIQVTESDPFSFSYDVSARNDSANGTAGYTVEYSATFNVVTNIPHNHEFDYAN*

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