Scaffold Ga0153998_1003570

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153998_1003570

Scaffold Ga0153998_1003570

Overview

Basic Information
Taxon OID	3300012120 Open in IMG/M
Scaffold ID	Ga0153998_1003570 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC082 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3609
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Lumber River State Park
Coordinates	Lat. (^o)	34.9171	Long. (^o)	-79.3534	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011465	Metagenome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153998_10035704	F011465	AGG	MGGIQESQSVELNLKNEGRMQDKEMERNGLAHRWFLIDTTMPIIFMSEMVLSHLSSMVESCFSSLLLMHRQIMSRGDLTRLEHINILLDLSSTRDFKMLLCMIGMMEKMLGFWDANLFFPLLMWGVLSL*

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