Scaffold Ga0153988_1009745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153988_1009745

Scaffold Ga0153988_1009745

Overview

Basic Information
Taxon OID	3300012119 Open in IMG/M
Scaffold ID	Ga0153988_1009745 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC072 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1987
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: North Carolina, Jones Lake State Park
Coordinates	Lat. (^o)	34.6815	Long. (^o)	-78.5955	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013385	Metagenome	271	Y
F032107	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153988_10097452	F032107	GGAG	MSWDDQVSAEESRGLASGVTSAPQASLSTSLMPHGPNHGTAESSSLVEGGSAVAGTCDVTGDCDTLVICDYDDLVTRDHNSLYQASQPVTSDIVTPNVTHDSDLWDGEHHVTSLSGHFGYLENDAKVLALSVLHIVCFIQKRPIGSRPIEQFPPILGAGSIM*
Ga0153988_10097453	F013385	N/A	MLPMLVPLAPWLLLLVLVSLQTHSILFLVPALELVNAFIPEDTLVLVALSDAPPEVSQLLRSLGMYLLSSLLPLRRRKVKRRRLVLVPGHLLPLGSLQASSLTELPLSSSLLLPLLLKGDHIL*

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